Verteidigung Dipl.-Bioinf. Anika Groß

Evolution von ontologiebasierten Mappings in den Lebenswissenschaften

• Paulinum, Felix-Klein-Hörsaal, 05.03.2014, 16 Uhr
• Betreuer: Erhard Rahm (Universität Leipzig), Zweitgutachter: Ulf Leser (Humboldt-Universität zu Berlin)

Lin, Ying-Chi ; Christen, Victor; Groß, Anika; Kirsten, Toralf; Domingos Cardoso, Silvio; Pruski, Cédric; Da Silveira, Marcos; Rahm, Erhard Evaluating Cross-lingual Semantic Annotation for Medical Forms Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 5 HEALTHINF: HEALTHINF, 145-155, 2020, Valletta, Malta. DOI: 10.5220/0008979901450155 2020-02

Klan, Friederike; König-Ries, Birgitta; Reimann, Peter; Seeger, Bernhard; Groß, Anika Workshop on Big (and Small) Data in Science and Humanities (BigDS 2019) BTW (Workshops) 2019 2019-03

Christen, Victor; Lin, Ying-Chi ; Groß, Anika; Domingos Cardoso, Silvio; Pruski, Cédric; Da Silveira, Marcos; Rahm, Erhard A learning-based approach to combine medical annotation results Data Integration in the Life Science (DILS) 2018 2018-11

Domingos Cardoso, Silvio; Pruski, Cédric; Da Silveira, Marcos; Lin, Ying-Chi; Groß, Anika; Rahm, Erhard; Reynaud-Delaître, Chantal; Evolving semantic annotations through multiple versions of controlled medical terminologies Health and Technology, 8:361–376, 2018 2018-09

Lin, Ying-Chi; Christen, Victor; Groß, Anika; Cardoso, Silvio Domingos; Pruski, Cedric; Da Silveira, Marcos; Rahm, Erhard Evaluating and improving annotation tools for medical forms Proc. Data Integration in the Life Science (DILS) 2017 2017-11

Nentwig, Markus; Groß, Anika; Möller, Maximilian; Rahm, Erhard Distributed Holistic Clustering on Linked Data Proc. OTM 2017 - Confederated International Conferences: CoopIS, C&TC, and ODBASE 2017, LNCS 10574, pp 371-382 2017-10

Lin, Ying-Chi; Groß, Anika; Kirsten, Toralf Integration and visualization of spatial data in LIFE it - Information Technology 59(4) 2017-04-18

Christen, Victor; Groß, Anika; Fisher, Jeffrey; Wang, Qing; Christen, Peter; Rahm, Erhard Temporal group linkage and evolution analysis for census data Proc. 19th Int. Conf. on Extending Database Technology (EDBT), Venice, 2017 2017-03

Groß, Anika; König-Ries, Birgitta; Reimann, Peter; Seeger, Bernhard BigDS17 - Vorwort BTW (Workshops) 2017 2017-03

Domingos Cardoso, Silvio; Reynaud-Delaître, Chantal; Da Silveira, Marcos; Lin, Ying-Chi; Groß, Anika; Rahm, Erhard; Pruski, Cédric Towards a Multi-level Approach for the Maintenance of Semantic Annotations Proc. 10th Int. Joint Conf.on Biomedical Engineering Systems and Technologies (BIOSTEC 2017), HEALTHINF, Porto, Feb. 2017 2017-02

Nentwig, Markus; Groß, Anika; Rahm, Erhard Holistic Entity Clustering for Linked Data IEEE International Conference on Data Mining Workshop, ICDMW 2016, Barcelona, Catalonia, Spain, December 12-15, 2016 2016-12

Domingos Cardoso, Silvio; Pruski, Cédric; Da Silveira, Marcos; Lin, Ying-Chi; Groß, Anika; Rahm, Erhard; Reynaud-Delaître, Chantal Leveraging the Impact of Ontology Evolution on Semantic Annotations Knowledge Engineering and Knowledge Management. Proc. EKAW, Springer LNCS 10024 , pp. 68-82, 2016 2016-11-04

Christen, Victor; Groß, Anika; Rahm, Erhard A Reuse-based Annotation Approach for Medical Documents Proc. 15th International Semantic Web Conference (ISWC), Springer LNCS 9981, pp. 135-150 , 2016 2016-10

Christen, Victor; Groß, Anika; Rahm, Erhard Approaches for Annotating Medical Documents Proc. Lernen. Wissen. Daten. Analysen. (LWDA), Potsdam, September 2016, CEUR 2016-09

Groß, A.; Pruski, C.; Rahm, E. Evolution of Biomedical Ontologies and Mappings: Overview of Recent Approaches Computational and Structural Biotechnology Journal. Vol. 14, 2016, pp. 333-340 2016-09

Nentwig, Markus; Groß, Anika; Rahm, Erhard A Clustering Approach for Holistic Link Discovery (Project overview) Proc. Lernen. Wissen. Daten. Analysen. (LWDA), Potsdam, September 2016, CEUR 2016-09

Christen, Victor; Groß, Anika; Varghese, Julian; Dugas, Martin; Rahm, Erhard Annotating Medical Forms using UMLS Proc. 11th Intl. Conference on Data Integration in the Life Sciences (DILS), Los Angeles, July 2015 2015-07

Christen, Victor; Hartung, Michael; Groß, Anika Region Evolution eXplorer - A tool for discovering evolution trends in ontology regions Journal of Biomedical Semantics 2015, 6:26 2015-06

Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E. Effective Composition of Mappings for Matching Biomedical Ontologies LNCS 7540, pp 176-190 2015

Lee, L. H.; Groß, A.; Hartung, M.; Liou, D. M.; Rahm, E. A Multi-Part Matching Strategy for Mapping LOINC with Laboratory Terminologies Journal of the American Medical Informatics Association (JAMIA) 2014-09

Christen, Victor; Groß, Anika; Hartung, Michael REX - a tool for discovering evolution trends in ontology regions Proc. 10th Intl. Conference on Data Integration in the Life Sciences (DILS), Lisbon, July 2014 2014-07

Groß, A. Evolution von ontologiebasierten Mappings in den Lebenswissenschaften Dissertation, Universität Leipzig 2014-03

Groß, A.; Dos Reis, J.C.; Hartung, M.; Pruski, C.; Rahm, E. Semi-Automatic Adaptation of Mappings between Life Science Ontologies Proc. 9th Intl. Conference on Data Integration in the Life Sciences (DILS), Montreal, July 2013 2013-07

Hartung, M.; Kolb, L.; Groß, A.; Rahm, E. Optimizing Similarity Computations for Ontology Matching - Experiences from GOMMA Proc. 9th Intl. Conference on Data Integration in the Life Sciences (DILS), 2013 2013-07

Hartung, M.; Groß, A.; Rahm, E. Composition Methods for Link Discovery Proc. of 15. GI-Fachtagung für Datenbanksysteme in Business, Technologie und Web (BTW), 2013 2013-03

Hartung, M.; Groß, A.; Rahm, E. COnto-Diff: Generation of Complex Evolution Mappings for Life Science Ontologies Journal of Biomedical Informatics 46 (1): 15-32 2013-02-01

Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E. GOMMA Results for OAEI 2012 Seventh International Workshop on Ontology Matching @ ISWC 2012 2012-11

Groß, A.; Hartung, M.; Thor, A.; Rahm, E. How do computed ontology mappings evolve? - A case study for life science ontologies Joint Workshop on Knowledge Evolution and Ontology Dynamics @ ISWC 2012 2012-11

Groß, A.; Hartung, M.; Prüfer, K.; Kelso, J.; Rahm, E. Impact of Ontology Evolution on Functional Analyses Bioinformatics 28 (20): 2671-2677 2012-10-10

Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E. Effective Composition of Mappings for Matching Biomedical Ontologies The Semantic Web: ESWC 2012 Satellite Events. Revised Selected Papers. 2012-09

Groß, A.; Hartung, M.; Thor, A.; Rahm, E. How do Ontology Mappings Change in the Life Sciences? Selected Poster @ Intl. Conference on Data Integration in the Life Sciences (DILS) 2012-06

Hartung, M.; Groß, A.; Rahm, E. Determining and Analyzing Semantic Ontology Changes with CODEX Demo @ Intl. Conference on Data Integration in the Life Sciences (DILS) 2012-06

Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E. Effective Mapping Composition for Biomedical Ontologies Semantic Interoperability in Medical Informatics @ ESWC 2012 2012-05

Groß, A.; Hartung, M.; Thor, A.; Rahm, E. How do Ontology Mappings Change in the Life Sciences? CoRR abs/1204.2731 2012-04

Hartung, M.; Groß, A.; Rahm, E. CODEX: Exploration of semantic changes between ontology versions Bioinformatics 28 (6): 895-896 2012-03

Kirsten, T.; Groß, A.; Hartung, M.; Rahm, E. GOMMA: A Component-based Infrastructure for managing and analyzing Life Science Ontologies and their Evolution Journal of Biomedical Semantics 2011, 2:6 2011-11

Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E. Mapping Composition for Matching Large Life Science Ontologies 2nd International Conference on Biomedical Ontology (ICBO 2011) 2011-07

Hartung, M.; Groß, A.; Rahm, E. Rule-based Generation of Diff Evolution Mappings between Ontology Versions CoRR abs/1010.0122 2010-10

Kirsten, T.; Kolb, L.; Hartung, M.; Groß, A.; Köpcke, H.; Rahm, E. Data Partitioning for Parallel Entity Matching Proc. 8th Intl. Workshop on Quality in Databases (QDB), 2010 2010-09

Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E. On Matching Large Life Science Ontologies in Parallel 7th International Conference on Data Integration in the Life Sciences (DILS 2010) 2010-08

Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E. Discovering Evolving Regions in Life Science Ontologies 7th International Conference on Data Integration in the Life Sciences (DILS 2010) 2010-08

Kirsten, T.; Hartung, M.; Groß, A.; Rahm, E. Efficient Management of Biomedical Ontology Versions LNCS 5872, pp.574-583, 4th Intl. Workshop on Ontology Content (Part of the OTM Conferences & Workshops) 2009-11

Hartung, M.; Kirsten, T.; Groß, A.; Rahm, E. OnEX: Exploring changes in life science ontologies BMC Bioinformatics 2009, 10:250 2009-08

Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E. Estimating the Quality of Ontology-based Annotations by Considering Evolutionary Changes Proc. 6th Data Integration in the Life Sciences (DILS) Conf., Springer LNCS 5647, 2009 2009-07

Hartung, M.; Kirsten, T.; Groß, A.; Rahm, E. Exploring changes in life science ontologies with OnEX Poster at 7th Leipzig Research Festival for Life Sciences 2008 and 6th Intl. Workshop on Data Integration in the Life Sciences (DILS) 2009 2009-07

Thor, A.; Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E. An Evolution-based Approach for Assessing Ontology Mappings - A Case Study in the Life Sciences Proc. of 13. GI-Fachtagung für Datenbanksysteme in Business, Technologie und Web (BTW), 2009 2009-03

Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E. Evolution-based analysis of functional protein annotation Poster at 7th Leipzig Research Festival for Life Sciences 2008 2008-12