Research assistant

Interdisciplinary Center for Bioinformatics
Working group 1: Data management and integration in the bioinformatics

Contacts

Phone: 03 41 / 97 16731
e-mail: tkirsten@informatik.uni-leipzig.de
homepage: http://www.informatik.uni-leipzig.de/~tkirsten

Selected Publications

Kirsten, Toralf; Meineke, Frank; …; Scholz, Markus; Rahm, Erhard; Binder, Hans; Löffler, Markus The Leipzig Health Atlas—An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online Methods of Information in Medicine 2022

Thor, A.; Kirsten, T. Das E-Assessment-Tool DMT Datenbankspektrum 21(1) 2021-01

Lin, Ying-Chi ; Christen, Victor; Groß, Anika; Kirsten, Toralf; Domingos Cardoso, Silvio; Pruski, Cédric; Da Silveira, Marcos; Rahm, Erhard Evaluating Cross-lingual Semantic Annotation for Medical Forms Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 5 HEALTHINF: HEALTHINF, 145-155, 2020, Valletta, Malta. DOI: 10.5220/0008979901450155 2020-02

Winter, A; Stäubert, S; Ammon, D; , Aiche, S; Beyan,O; Bischoff, V; Daumke, P; Decker, S; Funkat, G; Gewehr, JE; , de Greiff, A; Haferkamp, S; Hahn , U; Henkel, A; Kirsten, T; Klöss, T; Lippert, J; Löbe, M; Lowitsch, V; Rahm, E; Löffler, M Smart Medical Information Technology for Healthcare (SMITH) Methods of Information in Medicine 2018-07

Lin, Ying-Chi; Groß, Anika; Kirsten, Toralf Integration and visualization of spatial data in LIFE it - Information Technology 59(4) 2017-04-18

Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E. Effective Composition of Mappings for Matching Biomedical Ontologies LNCS 7540, pp 176-190 2015

Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E. GOMMA Results for OAEI 2012 Seventh International Workshop on Ontology Matching @ ISWC 2012 2012-11

Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E. Effective Composition of Mappings for Matching Biomedical Ontologies The Semantic Web: ESWC 2012 Satellite Events. Revised Selected Papers. 2012-09

Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E. Effective Mapping Composition for Biomedical Ontologies Semantic Interoperability in Medical Informatics @ ESWC 2012 2012-05

Kirsten, T.; Groß, A.; Hartung, M.; Rahm, E. GOMMA: A Component-based Infrastructure for managing and analyzing Life Science Ontologies and their Evolution Journal of Biomedical Semantics 2011, 2:6 2011-11

Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E. Mapping Composition for Matching Large Life Science Ontologies 2nd International Conference on Biomedical Ontology (ICBO 2011) 2011-07

Kirsten, T.; Kiel, A. Ontology-based Registration of Entities for Data Integration in large biomedical Research Projects GI-Workshop - Informationsintegration in Service-Architekturen 2010-09

Kirsten, T.; Kolb, L.; Hartung, M.; Groß, A.; Köpcke, H.; Rahm, E. Data Partitioning for Parallel Entity Matching Proc. 8th Intl. Workshop on Quality in Databases (QDB), 2010 2010-09

Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E. On Matching Large Life Science Ontologies in Parallel 7th International Conference on Data Integration in the Life Sciences (DILS 2010) 2010-08

Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E. Discovering Evolving Regions in Life Science Ontologies 7th International Conference on Data Integration in the Life Sciences (DILS 2010) 2010-08

Kirsten, T.; Hartung, M.; Groß, A.; Rahm, E. Efficient Management of Biomedical Ontology Versions LNCS 5872, pp.574-583, 4th Intl. Workshop on Ontology Content (Part of the OTM Conferences & Workshops) 2009-11

Hartung, M.; Kirsten, T.; Groß, A.; Rahm, E. OnEX: Exploring changes in life science ontologies BMC Bioinformatics 2009, 10:250 2009-08

Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E. Estimating the Quality of Ontology-based Annotations by Considering Evolutionary Changes Proc. 6th Data Integration in the Life Sciences (DILS) Conf., Springer LNCS 5647, 2009 2009-07

Hartung, M.; Kirsten, T.; Groß, A.; Rahm, E. Exploring changes in life science ontologies with OnEX Poster at 7th Leipzig Research Festival for Life Sciences 2008 and 6th Intl. Workshop on Data Integration in the Life Sciences (DILS) 2009 2009-07

Thor, A.; Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E. An Evolution-based Approach for Assessing Ontology Mappings - A Case Study in the Life Sciences Proc. of 13. GI-Fachtagung für Datenbanksysteme in Business, Technologie und Web (BTW), 2009 2009-03

Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E. Evolution-based analysis of functional protein annotation Poster at 7th Leipzig Research Festival for Life Sciences 2008 2008-12

Hartung, M.; Kirsten, T.; Rahm, E. Analyzing the Evolution of Life Science Ontologies and Mappings Proc. of 5th Int. Workshop on Data Integration in the Life Sciences (DILS), Springer LNCS 5109, 2008 2008-06

Kirsten, T.; Thor, A.; Rahm, E. Instance-based matching of large life science ontologies Proc. of 4th Intl. Workshop on Data Integration in the Life Sciences (DILS), 2007 2007-06

Thor, A.; Kirsten, T.; Rahm, E. Instance-based matching of hierarchical ontologies Proc. of 12. GI-Fachtagung für Datenbanksysteme in Business, Technologie und Web (BTW), 2007 2007-03

Rahm, Erhard; Kirsten, Toralf; Lange, Jörg The GeWare data warehouse platform for the analysis of molecular-biological and clinical data Journal of Integrative Bioinformatics, 4(1):47, 2007 2007-01-20

Lange, J.; Kirsten, T.; Rahm, E. An integrated analysis platform for experimental and clinical data in modern cancer research studies Proc. GMDS Conf., Leipzig, 2006 2006-09

Kirsten, Toralf; Rahm, Erhard BioFuice: Mapping-based data integration in bioinformatics Proc. of 3rd Int. Workshop on Data Integration in the Life Sciences (DILS), Springer LNCS 4075, 2006 2006-07

Kirsten, Toralf; Lange, Jörg; Rahm, Erhard An integrated platform for analyzing molecular-biological data within clinical studies EDBT-Workshop Information Integration in Healthcare Applications, Springer LNCS 4254, 2006 2006-03

Kirsten, T.; Körner, C.; Do, H.H.; Rahm, E. Hybrid Integration of Molecular-biological Annotation Data Proc. 2nd International Workshop on Data Integration in the Life Sciences (DILS), Springer LNCS 3615, 2005 2005-07

Rahm, E.; Thor, A.; Aumueller, D.; Do, H.H.; Golovin, N.; Kirsten, T. iFuice - Information Fusion utilizing Instance Correspondences and Peer Mappings Proc. 8th Intl. Workshop on the Web and Databases (WebDB), 2005 2005-06

Körner, C.; Kirsten, T.; Do, H.H., Rahm, E. Hybride Integration von molekularbiologischen Annotationsdaten 11th Conf. of Database Systems for Business, Technology and Web (BTW) 2005-03

Kirsten, T.; Rahm, E. BioFuice: A decentralized Approach to integrate molecular-biological Data Proc 4th Research Festival for Life Sciences, Leipzig, Dec. 2005 2005

Lange, J.; Kirsten, T.; Rahm, E.; Berger, H.; Löffler, M. An integrated platform for analyzing clinical and molecular-biological data in collaborative research projects Proc 4th Research Festival for Life Sciences, Leipzig, Dec. 2005 2005

Kirsten, T.; Do, H.H.; Rahm, E. A Data Warehouse for Multidimensional Gene Expression Analysis Technical Report, IZBI Working Paper Nr. 1 2004-05

Kirsten, T.; Do, H.H.; Rahm, E. Data Integration for Genomic Research Proc. 3rd Biotech Day, Univ. Leipzig, May 2004 2004-03

Kirsten, T.; Do, H.H.; Rahm, E. A Multidimensional Data Warehouse for Gene Expression Analysis Proc. German Conference on Bioinformatics (GCB) 2003, Munich, October 2003 2003-10

Kirsten, T.; Do, H.H.; Rahm, E. Data Integration for Analyzing Gene Expression Data Proc. 6th Meeting of Microarray Gene Expression Data Society (MGED), Aix-en-Provence (France), September 2003 2003-09

Kirsten, T.; Do, H.H.; Rahm, E. Data Integration for Analyzing Gene Expression Data Proc. 2nd Biotech Day, Univ. Leipzig, May 2003. pp. 88-89 2003-05

Rahm, E.; Do, H.H.; Kirsten, T. Data Integration for Analyzing Gene Expression Data - Selected Projects Data Integration for Analyzing Gene Expression Data. Bonn, May 2003. 2003-05

Do, H.H.; Kirsten, T. ; Rahm, E. Comparative Evaluation of Microarray-based Gene Expression Databases Proc. 10. Fachtagung Datenbanksysteme für Business, Technologie und Web (BTW 2003), GI, Lecture Notes in Informatics (LNI), Feb. 2003 2003-02

Kirsten, T.; Do, H.H.; Sosna, D.; Rahm, E.; Krohn, K.; Eszlinger, M.; Paschke, R. Gene Expression Warehousing in Leipzig Poster for the Workshop on Databases and Data Integration in Genome Research, Berlin, February 2002 2002-02

Kirsten, T.; Do, H.H.; Rahm, E.; Krohn, K. Gene Expression Warehousing in Leipzig. Poster/Abstract, Proc. Biotech Day, Univ. Leipzig, May 2002, pp. 152-153. 2002